Source code for causalexplain.estimators.ges.decomposable_score
# Copyright 2021 Juan L Gamella
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"""Module containing the DecomposableScore class, inherited by all
classes which implement a locally decomposable score for directed
acyclic graphs. By default, the class also caches the results of
computing local scores.
NOTE: It is not mandatory to inherit this class when developing custom
scores to use with the GES implementation in ges.py. The only
requirement is that the class defines:
1. the local_score function (see below),
2. an attribute "p" for the total number of variables.
"""
import copy
# --------------------------------------------------------------------
# l0-penalized Gaussian log-likelihood score for a sample from a single
# (observational) environment
[docs]
class DecomposableScore():
[docs]
def __init__(self, data, cache=True, debug=0):
self._data = copy.deepcopy(data)
self._cache = {} if cache else None
self._debug = debug
self.p = None
[docs]
def local_score(self, x, pa):
"""
Return the local score of a given node and a set of
parents. If self.cache=True, will use previously computed
score if possible.
Parameters
----------
x : int
a node
pa : set of ints
the node's parents
Returns
-------
score : float
the corresponding score
"""
if self._cache is None:
return self._compute_local_score(x, pa)
else:
key = (x, tuple(sorted(pa)))
try:
score = self._cache[key]
print("score%s: using cached value %0.2f" %
(key, score)) if self._debug >= 2 else None
except KeyError:
score = self._compute_local_score(x, pa)
self._cache[key] = score
print("score%s = %0.2f" % (key, score)) if self._debug >= 2 else None
return score
def _compute_local_score(self, x, pa):
"""
Compute the local score of a given node and a set of
parents.
Parameters
----------
x : int
a node
pa : set of ints
the node's parents
Returns
-------
score : float
the corresponding score
"""
return 0