Source code for causalexplain.estimators.ges.decomposable_score

# Copyright 2021 Juan L Gamella

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"""Module containing the DecomposableScore class, inherited by all
classes which implement a locally decomposable score for directed
acyclic graphs. By default, the class also caches the results of
computing local scores.

NOTE: It is not mandatory to inherit this class when developing custom
scores to use with the GES implementation in ges.py. The only
requirement is that the class defines:
  1. the local_score function (see below),
  2. an attribute "p" for the total number of variables.

"""

import copy

# --------------------------------------------------------------------
# l0-penalized Gaussian log-likelihood score for a sample from a single
# (observational) environment


[docs] class DecomposableScore():
[docs] def __init__(self, data, cache=True, debug=0): self._data = copy.deepcopy(data) self._cache = {} if cache else None self._debug = debug self.p = None
[docs] def local_score(self, x, pa): """ Return the local score of a given node and a set of parents. If self.cache=True, will use previously computed score if possible. Parameters ---------- x : int a node pa : set of ints the node's parents Returns ------- score : float the corresponding score """ if self._cache is None: return self._compute_local_score(x, pa) else: key = (x, tuple(sorted(pa))) try: score = self._cache[key] print("score%s: using cached value %0.2f" % (key, score)) if self._debug >= 2 else None except KeyError: score = self._compute_local_score(x, pa) self._cache[key] = score print("score%s = %0.2f" % (key, score)) if self._debug >= 2 else None return score
def _compute_local_score(self, x, pa): """ Compute the local score of a given node and a set of parents. Parameters ---------- x : int a node pa : set of ints the node's parents Returns ------- score : float the corresponding score """ return 0