causalexplain.estimators package

Subpackages

• causalexplain.estimators.cam package
  • Submodules
    • CAM
      • CAM.__init__()
      • CAM.fit()
      • CAM.predict()
      • CAM.fit_predict()
    • main()
    • computeScoreMat()
    • computeScoreMatParallel()
    • pruning()
    • selGam()
    • selGamBoost()
    • selLasso()
    • selLm()
    • selLmBoost()
    • train_GAMboost()
    • train_LMboost()
    • train_gam()
    • train_gam_sm()
    • train_gp()
    • train_lasso()
    • train_linear()
    • updateScoreMat()
  • Module contents
• causalexplain.estimators.fci package
  • Submodules
    • FCI
      • FCI.__init__()
      • FCI.fit_predict()
      • FCI.filter_causes_only()
    • main()
  • Module contents
• causalexplain.estimators.ges package
  • Submodules
    • DecomposableScore
      • DecomposableScore.__init__()
      • DecomposableScore.local_score()
    • GES
      • GES.dag
      • GES.ges_adjmat
      • GES.ges_score
      • GES.is_fitted_
      • GES.feature_names
      • GES.metrics
      • GES.__init__()
      • GES.phases
      • GES.iterate
      • GES.debug
      • GES.fit()
      • GES.fit_predict()
      • GES.fit_bic()
      • GES.forward_step()
      • GES.backward_step()
      • GES.turning_step()
      • GES.insert()
      • GES.score_valid_insert_operators()
      • GES.delete_operator()
      • GES.score_valid_delete_operators()
      • GES.turn()
      • GES.score_valid_turn_operators()
      • GES.score_valid_turn_operators_dir()
      • GES.score_valid_turn_operators_undir()
    • main()
    • GaussObsL0Pen
      • GaussObsL0Pen.__init__()
      • GaussObsL0Pen.full_score()
    • na()
    • neighbors()
    • adj()
    • pa()
    • ch()
    • is_clique()
    • is_dag()
    • topological_ordering()
    • semi_directed_paths()
    • separates()
    • chain_component()
    • induced_subgraph()
    • vstructures()
    • only_directed()
    • only_undirected()
    • skeleton()
    • is_consistent_extension()
    • pdag_to_cpdag()
    • dag_to_cpdag()
    • pdag_to_dag()
    • order_edges()
    • label_edges()
    • cartesian()
    • sort()
    • subsets()
    • member()
    • delete()
  • Module contents
• causalexplain.estimators.lingam package
  • Submodules
    • BootstrapMixin
      • BootstrapMixin.bootstrap()
    • BootstrapResult
      • BootstrapResult.__init__()
      • BootstrapResult.adjacency_matrices_
      • BootstrapResult.total_effects_
      • BootstrapResult.get_causal_direction_counts()
      • BootstrapResult.get_directed_acyclic_graph_counts()
      • BootstrapResult.get_probabilities()
      • BootstrapResult.get_total_causal_effects()
      • BootstrapResult.get_paths()
    • DirectLiNGAM
      • DirectLiNGAM.is_fitted_
      • DirectLiNGAM.metrics
      • DirectLiNGAM.dag
      • DirectLiNGAM.feature_names
      • DirectLiNGAM.__init__()
      • DirectLiNGAM.fit()
      • DirectLiNGAM.fit_predict()
    • main()
    • find_all_paths()
    • predict_adaptive_lasso()
  • Module contents
• causalexplain.estimators.notears package
  • Submodules
    • LBFGSBScipy
      • LBFGSBScipy.__init__()
      • LBFGSBScipy.step()
    • main()
    • notears_linear()
    • LocallyConnected
      • LocallyConnected.weight
      • LocallyConnected.bias
      • LocallyConnected.__init__()
      • LocallyConnected.reset_parameters()
      • LocallyConnected.forward()
      • LocallyConnected.extra_repr()
    • main()
    • least_squares_loss()
    • least_squares_loss_grad()
    • least_squares_loss_cov()
    • least_squares_loss_cov_grad()
    • run()
    • notears_standard()
    • NotearsMLP
      • NotearsMLP.__init__()
      • NotearsMLP.forward()
      • NotearsMLP.h_func()
      • NotearsMLP.l2_reg()
      • NotearsMLP.fc1_l1_reg()
      • NotearsMLP.fc1_to_adj()
    • NotearsSobolev
      • NotearsSobolev.__init__()
      • NotearsSobolev.sobolev_basis()
      • NotearsSobolev.forward()
      • NotearsSobolev.h_func()
      • NotearsSobolev.l2_reg()
      • NotearsSobolev.fc1_l1_reg()
      • NotearsSobolev.fc1_to_adj()
    • squared_loss()
    • dual_ascent_step()
    • notears_nonlinear()
    • main()
    • NOTEARS
      • NOTEARS.__init__()
      • NOTEARS.notears_standard()
      • NOTEARS.fit()
      • NOTEARS.predict()
      • NOTEARS.fit_predict()
    • main()
    • TraceExpm
      • TraceExpm.forward()
      • TraceExpm.backward()
    • main()
    • set_random_seed()
    • is_dag()
    • simulate_dag()
    • simulate_parameter()
    • simulate_linear_sem()
    • simulate_nonlinear_sem()
    • count_accuracy()
    • threshold_output()
    • generate_random_dag()
    • simulate_from_dag_lg()
    • compare_graphs_undirected()
    • compare_graphs_precision()
    • compare_graphs_recall()
    • compare_graphs_specificity()
  • Module contents
• causalexplain.estimators.pc package
  • Submodules
    • power_divergence()
    • chi_square()
    • pearsonr()
    • DAG
      • DAG.__init__()
      • DAG.add_node()
      • DAG.add_nodes_from()
      • DAG.add_edge()
      • DAG.add_edges_from()
      • DAG.get_parents()
      • DAG.moralize()
      • DAG.get_leaves()
      • DAG.out_degree_iter()
      • DAG.in_degree_iter()
      • DAG.get_roots()
      • DAG.get_children()
      • DAG.get_independencies()
      • DAG.local_independencies()
      • DAG.is_iequivalent()
      • DAG.get_immoralities()
      • DAG.is_dconnected()
      • DAG.minimal_dseparator()
      • DAG.get_markov_blanket()
      • DAG.active_trail_nodes()
      • DAG.to_pdag()
      • DAG.do()
      • DAG.get_ancestral_graph()
      • DAG.to_daft()
      • DAG.get_random()
    • convert_args_tuple()
    • StructureEstimator
      • StructureEstimator.data
      • StructureEstimator.complete_samples_only
      • StructureEstimator.state_names
      • StructureEstimator.__init__()
      • StructureEstimator.variables
      • StructureEstimator.state_counts()
    • Independencies
      • Independencies.__init__()
      • Independencies.contains()
      • Independencies.__contains__()
      • Independencies.get_all_variables()
      • Independencies.get_assertions()
      • Independencies.add_assertions()
      • Independencies.closure()
      • Independencies.entails()
      • Independencies.is_equivalent()
      • Independencies.reduce()
      • Independencies.latex_string()
      • Independencies.get_factorized_product()
    • IndependenceAssertion
      • IndependenceAssertion.__init__()
      • IndependenceAssertion.get_assertion()
      • IndependenceAssertion.latex_string()
    • PC
      • PC.dag
      • PC.pdag
      • PC.is_fitted_
      • PC.metrics
      • PC.__init__()
      • PC.fit()
      • PC.fit_predict()
      • PC.build_skeleton()
      • PC.skeleton_to_pdag()
    • main()
    • PDAG
      • PDAG.__init__()
      • PDAG.copy()
      • PDAG.to_dag()
  • Module contents
• causalexplain.estimators.rex package
  • Submodules
    • Knowledge
      • Knowledge.__init__()
      • Knowledge.info()
      • Knowledge.retrieve()
    • Rex
      • Rex.shaps
      • Rex.hierarchies
      • Rex.pi
      • Rex.models
      • Rex.dag
      • Rex.indep
      • Rex.feature_names
      • Rex.root_causes
      • Rex.G_final
      • Rex.n_jobs
      • Rex.__init__()
      • Rex.name
      • Rex.verbose
      • Rex.random_state
      • Rex.hpo_n_trials
      • Rex.is_fitted_
      • Rex.fit()
      • Rex.predict()
      • Rex.fit_predict()
      • Rex.iterative_predict()
      • Rex.bootstrap()
      • Rex.score()
      • Rex.compute_regression_quality()
      • Rex.summarize_knowledge()
      • Rex.break_cycles()
      • Rex.get_prior_from_ref_graph()
    • main()
  • Module contents
    • Rex
      • Rex.shaps
      • Rex.hierarchies
      • Rex.pi
      • Rex.models
      • Rex.dag
      • Rex.indep
      • Rex.feature_names
      • Rex.root_causes
      • Rex.G_final
      • Rex.n_jobs
      • Rex.__init__()
      • Rex.name
      • Rex.verbose
      • Rex.random_state
      • Rex.hpo_n_trials
      • Rex.is_fitted_
      • Rex.fit()
      • Rex.predict()
      • Rex.fit_predict()
      • Rex.iterative_predict()
      • Rex.bootstrap()
      • Rex.score()
      • Rex.compute_regression_quality()
      • Rex.summarize_knowledge()
      • Rex.break_cycles()
      • Rex.get_prior_from_ref_graph()
    • Knowledge
      • Knowledge.__init__()
      • Knowledge.info()
      • Knowledge.retrieve()

Module contents

Estimators module for causal discovery.

This module provides various estimators and algorithms for causal discovery, including: - REX - CAM (Causal Additive Models) - FCI (Fast Causal Inference) - GES (Greedy Equivalence Search) - LiNGAM (Linear Non-Gaussian Acyclic Models) - NOTEARS (Non-combinatorial Optimization via Trace Exponential and Augmented lagRangian for Structure learning) - PC (Peter-Clark algorithm)